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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122419923_122429769_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122419923 - 122429769
Intron Length:
9847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTACTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TATTACTGATTT
Flanking Amino Acid:
ADDLLEAVLTVMKMTGMDSH
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.2
34
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
77.5
0.62
0.9
74.2
40
Minor 5ss
41.5
-0.9
2.8
49.9
46.4
Minor BPS
52.8
0.17
1.9
75.45
41

Associated Gene:

Gene:
EFHC2
Ensembl Gene ID:
ENSAPLG00000012158
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028663
122419763 - 122470616
50854