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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122439157_122444122_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122439157 - 122444122
Intron Length:
4966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTATTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTTACAATT
Flanking Amino Acid:
SVYEYTQRNSGILGGKFLER
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.3
0.55
0.8
69.3
31.4
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
50.8
0.1
1.7
73.49
37.6

Associated Gene:

Gene:
EFHC2
Ensembl Gene ID:
ENSAPLG00000012158
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045116
122421227 - 122470616
49390
ENSAPLT00000028663
122419763 - 122470616
50854
ENSAPLT00000012680
122419827 - 122470616
50790
ENSAPLT00000045869
122421227 - 122470616
49390