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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122444266_122445344_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122444266 - 122445344
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTGA
5'SS Class:
major
3'SS Sequence:
ACATCTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTGCTTTTAATT
Flanking Amino Acid:
KDFKKFLEKDRSGLESNILR
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
69.5
37.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.9
0.58
0.8
73.7
36
Minor 5ss
45.7
-0.5
2.5
59.1
45.3
Minor BPS
63.6
0.5
1.3
72.08
39.9

Associated Gene:

Gene:
EFHC2
Ensembl Gene ID:
ENSAPLG00000012158
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045869
122421227 - 122470616
49390
ENSAPLT00000045116
122421227 - 122470616
49390
ENSAPLT00000028663
122419763 - 122470616
50854
ENSAPLT00000012680
122419827 - 122470616
50790