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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122453582_122453884_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122453582 - 122453884
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATAT
5'SS Class:
major
3'SS Sequence:
CCAATTTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATGTTCCCAATT
Flanking Amino Acid:
RGRYILDNRKTGAVHQEFYR
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
77.7
33.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
66.9
0.38
0.9
66.3
39.2
Minor 5ss
35
-1.7
3.1
47.6
47.9
Minor BPS
49.9
0.07
1.8
70.96
40.3

Associated Gene:

Gene:
EFHC2
Ensembl Gene ID:
ENSAPLG00000012158
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045116
122421227 - 122470616
49390
ENSAPLT00000028663
122419763 - 122470616
50854
ENSAPLT00000012680
122419827 - 122470616
50790
ENSAPLT00000045869
122421227 - 122470616
49390