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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122455392_122457280_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122455392 - 122457280
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATGA
5'SS Class:
major
3'SS Sequence:
CCTTCATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATTTTCTTGATT
Flanking Amino Acid:
DDPYTKERQKILDSMNPLRP
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
68.7
39.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
79.5
0.66
0.8
72.7
31
Minor 5ss
32.7
-2
2.9
39.7
45.6
Minor BPS
78.5
0.98
1
88.64
29.2

Associated Gene:

Gene:
EFHC2
Ensembl Gene ID:
ENSAPLG00000012158
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045116
122421227 - 122470616
49390
ENSAPLT00000028663
122419763 - 122470616
50854
ENSAPLT00000012680
122419827 - 122470616
50790
ENSAPLT00000045869
122421227 - 122470616
49390