About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122457505_122465619_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122457505 - 122465619
Intron Length:
8115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TGTATTGTAACT
Flanking Amino Acid:
PRVKNSGIVQGTIVRRHRIP
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
91.1
28.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
67.9
0.4
1.1
60.9
44
Minor 5ss
40.6
-1.1
3.1
59.8
44.7
Minor BPS
54.5
0.22
2
76.69
40.1

Associated Gene:

Gene:
EFHC2
Ensembl Gene ID:
ENSAPLG00000012158
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045869
122421227 - 122470616
49390
ENSAPLT00000045116
122421227 - 122470616
49390
ENSAPLT00000028663
122419763 - 122470616
50854
ENSAPLT00000012680
122419827 - 122470616
50790