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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122465771_122466311_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122465771 - 122466311
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTTTTAATA
Flanking Amino Acid:
ETMKAELQNQVLSFDAYVEE
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.6
0.67
0.9
77.6
35.5
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
75.5
0.8
1.1
78.11
33

Associated Gene:

Gene:
EFHC2
Ensembl Gene ID:
ENSAPLG00000012158
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012680
122419827 - 122470616
50790
ENSAPLT00000045116
122421227 - 122470616
49390
ENSAPLT00000028663
122419763 - 122470616
50854