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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122501821_122503229_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122501821 - 122503229
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
AGTTCTTTACAC
Flanking Amino Acid:
APEINTLIEESTEFIKQNIV
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
72.8
0.57
1
81
30.3
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
57
0.2
1.7
66.73
38.7

Associated Gene:

Gene:
FUNDC1
Ensembl Gene ID:
ENSAPLG00000012067
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029864
122500743 - 122513277
12535