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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122503028_122503229_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122503028 - 122503229
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTCGCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
AGTTATTTAACT
Flanking Amino Acid:
APEINTLIEEDHTWAFVVGK
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
78.8
0.65
0.8
72.4
32.2
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
72.4
0.78
1.4
84.4
35.6

Associated Gene:

Gene:
FUNDC1
Ensembl Gene ID:
ENSAPLG00000012067
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012550
122502547 - 122513277
10731