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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122510015_122553527_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
122510015 - 122553527
Intron Length:
43513

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
AGGAGAGAGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAGAGAG
U12 Branch Point Sequence:
GGCTGCGGGAGG
Flanking Amino Acid:
KLEGRGEREREGGGGGPA
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.9
0.9
69.6
41.4
Major BPS
36
-0.8
1.4
24.1
34.8
Major PPT
36.3
-0.7
1.6
20.6
35.3
Minor 5ss
19.9
-3.5
3.9
29.2
43.7
Minor BPS
32
-1.5
2.3
32.2
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027576
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035604
122509990 - 122648675
138686