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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122645128_122648573_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122645128 - 122648573
Intron Length:
3446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATGATTAATC
Flanking Amino Acid:
FHIAHLYEIQRKYHSAKEAY
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
57.9
0.23
2
72.44
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027576
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035604
122509990 - 122648675
138686
ENSAPLT00000029539
122553369 - 122649151
95783