About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122666414_122681564_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122666414 - 122681564
Intron Length:
15151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CAAGTATTGACA
Flanking Amino Acid:
PSSAEVLKACRNLGKNGLSN
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
86.6
0.82
0.6
85.4
22
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
46.8
-0.2
1.7
52.28
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011033
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011571
122662443 - 122699811
37369