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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122681695_122683239_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
122681695 - 122683239
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATGATTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATTCCATTATG
Flanking Amino Acid:
KLNPPTPSIYLENKRDAFFP
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
79.8
0.67
0.9
72.7
41.8
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
54
-0
2
65.56
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011033
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011571
122662443 - 122699811
37369