About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122686706_122686848_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122686706 - 122686848
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
HSDNESTSSDNSGRRRRGPF
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
86.7
0.82
0.8
80.7
35.9
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011033
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011571
122662443 - 122699811
37369