Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122686924_122688675_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

122686924 - 122688675

Intron Length:

1752

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TATTTTGCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTCAC

U12 Branch Point Sequence:

AGTTTGTCGATT

Flanking Amino Acid:

GTNIDLSDDKKWKLQLHELT

Intron Amino Acid Position:

550

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.81

0.9

75.5

40.6

Major BPS

64.5

0.36

1.2

69.3

37.7

Major PPT

82.8

0.74

0.9

77.6

36.4

Minor 5ss

39.5

-1.2

50.7

39.9

Minor BPS

45.4

-0.2

2.2

65.48

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011033

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011571

122662443 - 122699811

37369