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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122688825_122690050_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122688825 - 122690050
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTCTAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TTTTCTCTAAAT
Flanking Amino Acid:
YMKVPGSRTPGHQENNNFCS
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
74.7
0.56
0.9
70.5
38.7
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
69.7
0.7
1.7
90.15
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011033
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011571
122662443 - 122699811
37369