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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122707944_122713464_R

Intron Information:

Intron Rank:
147260
Intron Class:
major
Intron Phase:
Intron Coordinates:
122707944 - 122713464
Intron Length:
5521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCAAA
5'SS Class:
major
3'SS Sequence:
CTTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CTTTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
70.2
37.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
90.7
0.91
0.6
86.9
23.9
Minor 5ss
31.9
-2.1
3.1
38.5
46.8
Minor BPS
62.6
0.39
1.7
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035679
122706871 - 122713825
6955