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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122742011_122745316_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122742011 - 122745316
Intron Length:
3306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAAC
5'SS Class:
major
3'SS Sequence:
TTTGGTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TTTGGTTTGGCA
Flanking Amino Acid:
ICKKFFKEEIRFDTWLSSHL
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.3
75.1
35.1
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
76.3
0.59
1
72.9
42.2
Minor 5ss
29.2
-2.4
2.7
34.6
41.2
Minor BPS
39.2
-0.8
3.6
65.32
42

Associated Gene:

Gene:
DIPK2B
Ensembl Gene ID:
ENSAPLG00000010917
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011366
122734608 - 122745543
10936