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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12280858_12292316_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12280858 - 12292316
Intron Length:
11459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
TTATGTGTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATGACTTTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.1
0.63
1
69.4
45.8
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
60
0.39
1.7
74.74
42.3

Associated Gene:

Gene:
LRRC17
Ensembl Gene ID:
ENSAPLG00000012106
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012596
12280771 - 12299137
18367