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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12292454_12292684_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12292454 - 12292684
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAGT
5'SS Class:
major
3'SS Sequence:
TCTTCCAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAACATTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
68.8
42.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.7
0.49
0.9
66.1
33.5
Minor 5ss
33.2
-1.9
3.4
49
46.8
Minor BPS
60.3
0.4
1.5
72.78
37.7

Associated Gene:

Gene:
LRRC17
Ensembl Gene ID:
ENSAPLG00000012106
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012596
12280771 - 12299137
18367