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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_122971892_122972520_R

Intron Information:

Intron Rank:
146808
Intron Class:
major
Intron Phase:
Intron Coordinates:
122971892 - 122972520
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCAATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84
0.77
0.8
81.3
36.4
Minor 5ss
34
-1.8
2.9
40.9
39.4
Minor BPS
55.2
0.16
1.6
66.32
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025394
122971519 - 122973415
1897