About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123087208_123107531_F

Intron Information:

Intron Rank:
126959
Intron Class:
major
Intron Phase:
Intron Coordinates:
123087208 - 123107531
Intron Length:
20324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
GCATACGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
78.9
0.65
0.9
69.8
41.5
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
42.3
-0.5
2.3
58.09
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018413
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038178
123084138 - 123107795
23658