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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123162716_123164443_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123162716 - 123164443
Intron Length:
1728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATCTTTATA
Flanking Amino Acid:
LLLSLHILRAVAVLEGKIVI
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.4
0.8
0.7
80.7
31.2
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
63.3
0.41
1.6
75.39
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010902
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011350
123162649 - 123170936
8288
ENSAPLT00000018408
123159906 - 123170936
11031