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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123164807_123165340_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123164807 - 123165340
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
AAAATCTTGACA
Flanking Amino Acid:
HQEKVVLRLAASYSQPILSG
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
88.6
0.87
0.7
81.1
30.9
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
60
0.31
1.3
62.79
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010902
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018408
123159906 - 123170936
11031
ENSAPLT00000017475
123164362 - 123170936
6575
ENSAPLT00000011350
123162649 - 123170936
8288