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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123166927_123168075_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123166927 - 123168075
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGG
5'SS Class:
major
3'SS Sequence:
TTTATTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTCAACA
Flanking Amino Acid:
HRSSKLVSYTDVQTNGDNRK
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
66.2
44.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.3
0.7
0.9
77.8
35.2
Minor 5ss
31.7
-2.1
3.1
40.2
45.5
Minor BPS
64.1
0.44
1.5
75.89
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010902
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018408
123159906 - 123170936
11031
ENSAPLT00000017475
123164362 - 123170936
6575
ENSAPLT00000011350
123162649 - 123170936
8288