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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123186634_123188937_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
123186634 - 123188937
Intron Length:
2304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
AAATGTTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTCTTCTGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
73.2
0.52
1
65.4
44.5
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
59.2
0.37
1.6
73.47
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011309
123185989 - 123219927
33939