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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123211029_123215405_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123211029 - 123215405
Intron Length:
4377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTATTC
Flanking Amino Acid:
ACLLFASLPKGQPDATCHAF
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.8
78.1
40.1
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
53.6
0.09
1.6
60.6
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011309
123185989 - 123219927
33939