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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123215751_123216934_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123215751 - 123216934
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTGTTTTCCC
Flanking Amino Acid:
EKSKIHLNVSDRSSTVETHS
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.6
33.2
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
83.7
0.76
0.8
77.2
37.1
Minor 5ss
43.4
-0.7
3.2
57.2
46.9
Minor BPS
40.2
-0.7
3.7
69.99
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010861
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011309
123185989 - 123219927
33939