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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123227019_123227635_R

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
123227019 - 123227635
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
ACT|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AACTTCCTTTCAC|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTTTCCTTAACT
Flanking Amino Acid:
GGKHCVKEVTEAHVDTKNKV
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
30.4
-1.2
3.3
46.6
44.1
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
43.2
-0.3
3.2
66.4
39.8
Minor 5ss
94.7
1.49
0.9
90.9
28.7
Minor BPS
100
1.65
0.3
108.3
8.33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019896
123226890 - 123232665
5776