Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123228218_123229843_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123228218 - 123229843

Intron Length:

1626

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATTT

5'SS Class:

strong_major

3'SS Sequence:

CTTATTGTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TATATATAAATT

Flanking Amino Acid:

SKGQPAEAESRSTFAVDGKD

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

27.7

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

72.2

0.5

1.1

68.7

41.9

Minor 5ss

43.2

-0.7

3.3

64.8

46.5

Minor BPS

49.1

0.01

1.9

70.65

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019896

123226890 - 123232665

5776