About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123230791_123232072_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123230791 - 123232072
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATCACTTGAAAT
Flanking Amino Acid:
PRPRGARVAVVLSGCGVYDG
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.7
0.89
0.7
85.4
27.6
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
53.4
0.19
1.6
69.45
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019896
123226890 - 123232665
5776