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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123235282_123236176_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123235282 - 123236176
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TCTGCCTTTAAG
Flanking Amino Acid:
LMLHGQKLKTRSQKLLPVIQ
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
71.4
0.53
1
67
39.8
Major PPT
72.6
0.51
1
75.7
33.2
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
51.6
-0.1
2
60.43
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010860
123234872 - 123250865
15994