Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123237574_123237932_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123237574 - 123237932

Intron Length:

359

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTTACCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

TTGTTCTTAAAA

Flanking Amino Acid:

RVTCLRFSPTGRSWAATTTE

Intron Amino Acid Position:

689

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.8

86.9

30.1

Major BPS

82.2

0.8

71.9

35.8

Major PPT

83.1

0.74

0.8

77.6

35.4

Minor 5ss

39.9

-1.1

3.1

56.9

47.4

Minor BPS

75.4

0.79

1.3

80.2

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010371

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010860

123234872 - 123250865

15994