About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123238553_123239658_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123238553 - 123239658
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGGAAT
U12 Branch Point Sequence:
GTGAATGGAATT
Flanking Amino Acid:
SCNLSLDAMEEYLDRRKMTE
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
50.7
0.02
1.5
61.4
43.2
Major PPT
85
0.79
0.9
76.9
42.1
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
40
-0.6
2.1
55.07
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010860
123234872 - 123250865
15994