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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123239807_123240063_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123239807 - 123240063
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTTTCTTTACCA
Flanking Amino Acid:
KITAKQSAKGKSFTTLCYSA
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
86.9
0.83
0.8
81.9
34.5
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
77.3
0.85
1.5
86.93
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010860
123234872 - 123250865
15994