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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123240245_123240650_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123240245 - 123240650
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTTTA
5'SS Class:
major
3'SS Sequence:
TAATTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATGTTTTTAACC
Flanking Amino Acid:
TKETLMLNSDVLVVAFRPDG
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
77.3
33.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83
0.74
0.9
77.5
36.2
Minor 5ss
44.3
-0.6
2.8
59.1
45.4
Minor BPS
74.5
0.75
1.1
75.87
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010860
123234872 - 123250865
15994