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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123246193_123246704_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123246193 - 123246704
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTATTTATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTC
Flanking Amino Acid:
ACFFEENSLDLYTVSQDGAL
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.4
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.5
0.71
0.8
74.9
39.6
Minor 5ss
44.5
-0.6
2.5
56.5
41
Minor BPS
56.7
0.19
1.7
69.43
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010860
123234872 - 123250865
15994