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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123247452_123248458_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123247452 - 123248458
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTATATGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTATAT
U12 Branch Point Sequence:
TTCTCCCTATAT
Flanking Amino Acid:
VHSVSFSPDGKKFVITKDNV
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
54.3
0.11
1.2
52.6
41.6
Major PPT
65.6
0.35
1
60.6
38.8
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
53.7
0.19
2.1
78.08
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010860
123234872 - 123250865
15994