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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123248979_123249324_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123248979 - 123249324
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCCAG
5'SS Class:
major
3'SS Sequence:
CGTTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGCACTCAATT
Flanking Amino Acid:
GNRISLFDLKNNKCETLPLA
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
58.6
42.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83
0.74
0.8
77.5
35.5
Minor 5ss
33.5
-1.9
3.1
38.8
40.7
Minor BPS
56.2
0.27
1.8
75.04
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010860
123234872 - 123250865
15994