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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123249438_123250847_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123249438 - 123250847
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGATACTT
5'SS Class:
major
3'SS Sequence:
CTCCTCCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTTT
U12 Branch Point Sequence:
TCTTCTTTTTCC
Flanking Amino Acid:
QKFQYDFSGLLGTVYR
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.1
66.4
38.7
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
77.8
0.62
0.7
72.3
25.8
Minor 5ss
35
-1.7
3.4
53.1
43.8
Minor BPS
44.4
-0.4
3.6
69.99
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010371
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010860
123234872 - 123250865
15994