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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123251977_123252816_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123251977 - 123252816
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTTA
5'SS Class:
major
3'SS Sequence:
TTGTTTTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
HSAHSMQLDADSWIENDNLS
Intron Amino Acid Position:
1136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
70.8
35.4
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
80.2
0.68
0.9
76.6
36.7
Minor 5ss
39.8
-1.1
3.4
52
47
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010539
123251681 - 123289222
37542