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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123257004_123258010_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123257004 - 123258010
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTACAAATAAAA
Flanking Amino Acid:
DNCMATVDQKVTIDCPWSIY
Intron Amino Acid Position:
879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.5
35
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
86.5
0.82
0.6
85.6
21.6
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
43.6
-0.4
2
59.29
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010539
123251681 - 123289222
37542