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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123259499_123260609_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123259499 - 123260609
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
CTTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
AATCTATTAACA
Flanking Amino Acid:
EPQLKVEPLTDSLLAGIPQK
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
90.1
0.9
0.6
88.5
20.9
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
61.2
0.35
1.6
69.88
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010539
123251681 - 123289222
37542