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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123265788_123266483_R

Intron Information:

Intron Rank:
12
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
123265788 - 123266483
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATCCTCT
5'SS Class:
strong_minor
3'SS Sequence:
TTAACTTTGTTAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTTTCCTTAACT
Flanking Amino Acid:
ECQKHLGQMENYLQTSSLLA
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.6
0.2
1.2
58.7
41.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
69.5
0.44
1
70
41.1
Minor 5ss
84.3
1.16
1.3
82.8
29
Minor BPS
93.1
1.44
0.8
100
28.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010539
123251681 - 123289222
37542