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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123267900_123270474_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123267900 - 123270474
Intron Length:
2575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GTCTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTCTTTTAAAC
Flanking Amino Acid:
SVEAFEKHYLDLSHATIEMY
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.2
32.6
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73
0.52
1
69.7
39.6
Minor 5ss
37.9
-1.4
2.7
45.5
37.1
Minor BPS
62.9
0.39
1.4
69.55
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010539
123251681 - 123289222
37542