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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12327117_12328594_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12327117 - 12328594
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTTTATATTT
Flanking Amino Acid:
SNSAAFSVNQDIIRNLDGLS
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
49.7
0.06
1.8
71.56
40.4

Associated Gene:

Gene:
ARMC10
Ensembl Gene ID:
ENSAPLG00000012097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012591
12326965 - 12334077
7113