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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123273981_123274858_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123273981 - 123274858
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTGTTCATCT
Flanking Amino Acid:
NCVQELKLLEVSVPPGALDC
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81.6
0.71
0.8
78.3
35.1
Minor 5ss
34.1
-1.8
3
41.6
39
Minor BPS
51
0.11
2.2
79.81
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010539
123251681 - 123289222
37542