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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123275107_123276097_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123275107 - 123276097
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTAACTTTATTT
Flanking Amino Acid:
SQYVVNFGAGDGANWLTFFC
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
81.4
30.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
77.7
0.62
0.9
78
35.3
Minor 5ss
37.4
-1.4
3.3
49.4
41.4
Minor BPS
61.7
0.45
1.6
77.37
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010539
123251681 - 123289222
37542