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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123280836_123281501_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123280836 - 123281501
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TTAAACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTAAACT
Flanking Amino Acid:
MEWRRSYGRAPKMI
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.8
0.6
1
69.9
40.8
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
64.1
0.52
1.6
78.76
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010539
123251681 - 123289222
37542