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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12328730_12330033_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12328730 - 12330033
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTTGTATTAAAA
Flanking Amino Acid:
MNIKNQEEIQVYIEQVCKNV
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79.1
0.65
0.7
72.9
32
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
51.4
0.04
1.8
65.08
41.3

Associated Gene:

Gene:
ARMC10
Ensembl Gene ID:
ENSAPLG00000012097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012591
12326965 - 12334077
7113